Journal Paper

• Evaluating MedDRA-to-ICD terminology mappings [paper]
  BMC Medical Informatics and Decision Making. (2024).
  Zhang X, Feng Y, Li F, Ding J, Tahseen D, Hinojosa E, Chen Y, & Tao C.

• Deep multiview learning to identify imaging-driven subtypes in mild cognitive impairment [paper]
  BMC Bioinformatics. (2022).
  Feng Y, Kim M, Yao X, Liu K, Long Q, Shen L, & for the Alzheimer’s Disease Neuroimaging Initiative.

Conference Paper

• BundleCleaner: Unsupervised Denoising and Subsampling of Diffusion MRI-Derived Tractography Data [paper] [code]
  MICCAI 2023 Computational Diffusion MRI (CDMRI) Workshop. Vancouver, Canada. (2023).
  Feng Y, Chandio BQ, Villalón-Reina, JE, Thomopoulos SI, Joshi H, Nair G, Joshi AA, Venkatasubramanian G, John JP, & Thompson PM.

• Variational Autoencoders for Generating Synthetic Tractography-Based Bundle Templates in a Low-Data Setting [paper] [Oral]
  IEEE EMBC 2023. Sydney, Australia. (2023).
  Feng Y, Chandio BQ, Thomopoulos SI, Chattopadhyay T, & Thompson PM.

• Learning optimal white matter tract representations from tractography using a deep generative model for population analyses [paper] [code] [ Best Virtual Paper Award]
  SIPAIM 2022. Valparaiso, Chile. (2022).
  Feng Y, Chandio BQ, Chattopadhyay T, Thomopoulos SI, Owens-Walton C, Jahanshad N, Garyfallidis E, & Thompson PM.

• Deep Multiview Learning to Identify Population Structure with Multimodal Imaging [paper] [Oral]
  IEEE BIBE 2020. Cincinnati, Ohio. (2020).
  Feng Y, Kim M, Yao X, Liu K, Long Q, & Shen L.

Preprint

• BundleAGE: Predicting White Matter Age using Along-Tract Microstructural Profiles from Diffusion MRI [paper]
  Preprint. Submitted to SIPAIM 2024. Antigua, Guatamala. (2024).
  Feng Y, Villalon-Reina, JE, Nir TM, Chandio, BQ, Jahanshad N , Thompson PM.

• Amyloid, Tau, and APOE in Alzheimer’s Disease: Impact on White Matter Tracts [paper]
  Preprint. Submitted to PSB 2025. The Big Island of Hawaii (2025).
  Chandio BQ, Villalon-Reina JE, Nir TM, Thomopoulos SI, Feng Y, Benavidez S, Jahanshad N, Harezlak J, Garyfallidis E, Thompson PM, the Alzheimer’s Disease Neuroimaging Initiative.

• Deep Normative Tractometry for Identifying Joint White Matter Macro- and Micro-structural Abnormalities in Alzheimer’s Disease. [paper] [Oral]
  Preprint. Presented at IEEE EMBC 2024. Orlando, Florida. (2024).
  Feng Y, Chandio BQ, Villalon-Reina JE, Benavidez S, Chattopadhyay T, Chehrzadeh S, Laltoo E, Thomopoulos SI, Joshi H, Venkatasubramanian G, John JP, Jahanshad N, & Thompson PM.

• Bundle Analytics based Data Harmonization for Multi-Site Diffusion MRI Tractometry. [paper] [Oral]
  Preprint. Presented at IEEE EMBC 2024. Orlando, Florida. (2024).
  Chandio BQ, Villalon-Reina JE, Nir TM, Thomopoulos SI, Feng Y, Benavidez S, Jahanshad N, Harezlak J, Garyfallidis E, & Thompson PM.

• Brain Age Analysis and Dementia Classification using Convolutional Neural Networks trained on Diffusion MRI: Tests in Indian and North American Cohorts. [paper]
  Preprint. Presented at IEEE EMBC 2024. Orlando, Florida. (2024).
  Chattopadhyay T, Joshy NA, Ozarkar SS, Buwa K, Feng Y, Laltoo E, Thomopoulos SI, Villalon JE, Joshi H, Venkatasubramanian G, John JP, & Thompson PM.

• Enabling Smartphone-based Estimation of Heart Rate. [paper] [code]
  Preprint. ArXiv. (2019).
  Homdee N, Boukhechba M, Feng Y, Kramer N, Lach J, & Barnes LE.

In Review

• Microstructural Mapping of Neural Pathways in Alzheimer’s Disease using Macrostructure-Informed Normative Tractometry. [paper] [code]
  Preprint, Accepted to Alzheimer’s & Dementia, Special Issue on the 20th Anniversary of ADNI. (2024).
  Feng Y, Chandio, B. Q., Villalón-Reina, J. E., Thomopoulos, S. I., Nir, T. M., Benavidez, S., Laltoo, E., Chattopadhyay, T., Joshi, H., Venkatasubramanian. G., John, J. P., Jahanshad, N., Jack, C. R., Weiner M. W., Thompson, P. M., for the Alzheimer’s Disease Neuroimaging Initiative